Y47G6A.18

Y47G6A.18 |

No description available.

Graphics for Y47G6A.18

3'UTR Zoom

Locus

Legend: Blue:ORF, Gray:Updated 3'UTRome V3 dataset.

3'UTR mapped for Y47G6A.18

If available, we display here the 3'UTRs sequences we obtained by our analysis (in FASTA format). Putative canonical PAS sites, if found, are highlighted in yellow.

1 ID: 21243 - Tier: 1 - Name: Y47G6A.18 - Cosmid: Y47G6A.18 - WBGeneID: WBGene00021644 - Length: 1206 - PAS: gataaa
Cluster Coverage (%): 2664 reads (52.00%)
(See this 3'UTR in GBrowse!) (See this Gene in GBrowse!)

id	Name	Chr	Strand	Start	End	Length	PAS	Coverage
21243	Y47G6A.18	I	-	3508508	3509712	1206nt	gataaa (-26nt)	2664 reads

This 3'UTR isoform has been detected in the following tissues:

UTRome v3¹	Intestine²	Pharynx²	Body Muscle²	Arcade cells²	GABA neurons²	NMDA neurons²	Hypodermis²	Seam cells²

¹Murari et al., 2023
²Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)

>|3'UTR|1206nt|I:3508508..3509712|PAS:gataaa
aauccacaaccagugagucgggaaaaaauugagcuuuuuuuuugucuuugugcacuucagcuuuagcagauuuuuuuuga
gcuaagcgcugaaaacgugaaguacuaacagagcaggggcggcaaacgauuauuuccggcaaaucggcaaauugccgaga
uauuuuuucggcaaauugugguuuugcacuuuuuuuguuggaaguuaaauuuuaucggcgaaaaacgggaaaaaaauucc
aaaaacgcaccguuuuaagaguuuccgucuuuaaaaaaauuccucaaaacauuuccggcaaaucugauauccggcaaacu
cggcaaacugguaaauugucagaauugaaaauuuccggcaaaccggcaauuuuccggaauugaaaauuucuggaaaaaag
ccauuuggcgauuuuuccgaaaaaaaaacauuucuggcaaaacugguaagcggcaaucuggcaaauugucagaauugaaa
auuucggcaaccaauuugccgaaaauaaaaauuuccggcaaaccggcaaaucgccagauuugaaaauuucuggcuaaucg
gcaaaccggcaauuugccgauuuugccaaaaucauuuccggcaaaucggcaaaccggccaacuggcaaagugccagaauu
gaaaauuccggcaaccauuuugccgaaaauaaaaauuuccggcaaaucggcaaaccggcaauugccgcccaccccugcga
cagagaucauuuuacuuucaaaaaauuuuaauauaaaaaauauuuguuuccaggucaccaaugcguguacgugcaaucug
uaaucaagucuaaaccgguaccaucaauucucuucccucccgcguauuuauuguaugugcucuuucucuuccaucuguuu
ccauagcuuuucgucucucgauuuccuauuucuuccuaacauacaccauauucuauucuauuccaaucaaugugugauac
cauauaccguuucuuuuuucuuuuuuuuuuuugggauuucuuuguuucuucucuauguuuuuuguacauaagcgggaaau
gcucucuucauguuuuuuuuucuuucuuuuuuugggaucaacgcuuucugcagguuaauggucgcuuguguguuuccucu
uccugaaauuucccuuuuuuucucgaaaauucguuuuuaaauauguauugguuuucugugauaaauucucauccaucccc
cuuuu

2 ID: 21242 - Tier: 1 - Name: Y47G6A.18 - Cosmid: Y47G6A.18 - WBGeneID: WBGene00021644 - Length: 1316 - PAS: gataaa
Cluster Coverage (%): 2460 reads (48.00%)
(See this 3'UTR in GBrowse!) (See this Gene in GBrowse!)

id	Name	Chr	Strand	Start	End	Length	PAS	Coverage
21242	Y47G6A.18	I	-	3508398	3509712	1316nt	gataaa (-20nt)	2460 reads

This 3'UTR isoform has been detected in the following tissues:

UTRome v3¹	Intestine²	Pharynx²	Body Muscle²	Arcade cells²	GABA neurons²	NMDA neurons²	Hypodermis²	Seam cells²

>|3'UTR|1316nt|I:3508398..3509712|PAS:gataaa
aauccacaaccagugagucgggaaaaaauugagcuuuuuuuuugucuuugugcacuucagcuuuagcagauuuuuuuuga
gcuaagcgcugaaaacgugaaguacuaacagagcaggggcggcaaacgauuauuuccggcaaaucggcaaauugccgaga
uauuuuuucggcaaauugugguuuugcacuuuuuuuguuggaaguuaaauuuuaucggcgaaaaacgggaaaaaaauucc
aaaaacgcaccguuuuaagaguuuccgucuuuaaaaaaauuccucaaaacauuuccggcaaaucugauauccggcaaacu
cggcaaacugguaaauugucagaauugaaaauuuccggcaaaccggcaauuuuccggaauugaaaauuucuggaaaaaag
ccauuuggcgauuuuuccgaaaaaaaaacauuucuggcaaaacugguaagcggcaaucuggcaaauugucagaauugaaa
auuucggcaaccaauuugccgaaaauaaaaauuuccggcaaaccggcaaaucgccagauuugaaaauuucuggcuaaucg
gcaaaccggcaauuugccgauuuugccaaaaucauuuccggcaaaucggcaaaccggccaacuggcaaagugccagaauu
gaaaauuccggcaaccauuuugccgaaaauaaaaauuuccggcaaaucggcaaaccggcaauugccgcccaccccugcga
cagagaucauuuuacuuucaaaaaauuuuaauauaaaaaauauuuguuuccaggucaccaaugcguguacgugcaaucug
uaaucaagucuaaaccgguaccaucaauucucuucccucccgcguauuuauuguaugugcucuuucucuuccaucuguuu
ccauagcuuuucgucucucgauuuccuauuucuuccuaacauacaccauauucuauucuauuccaaucaaugugugauac
cauauaccguuucuuuuuucuuuuuuuuuuuugggauuucuuuguuucuucucuauguuuuuuguacauaagcgggaaau
gcucucuucauguuuuuuuuucuuucuuuuuuugggaucaacgcuuucugcagguuaauggucgcuuguguguuuccucu
uccugaaauuucccuuuuuuucucgaaaauucguuuuuaaauauguauugguuuucugugauaaauucucauccaucccc
cuuuucuuuuuucaugaccagcaguaguaaugauuuagauuuguuuuccuucaucauccuaaauuacacauauaguagau
guauugaaaaaaauugauaaaaauuuaucguggga

Updated miRanda Targets for Y47G6A.18 (Murari et al., submitted)

Y47G6A.18 transcript has been predicted to be targeted by the following miRNAs:

ID	miRNA	Target Gene	Score	Energy	% Binding (Target)	% Binding (miRNA)
72139	cel-miR-800-5p	Y47G6A.18	168	-21.31	78.95	78.95
148727	cel-miR-8207-3p	Y47G6A.18	166	-12.25	82.35	82.35
22082	cel-miR-79-3p	Y47G6A.18	163	-15.00	75.00	80.00
69607	cel-miR-797-5p	Y47G6A.18	161	-15.90	77.78	83.33
96030	cel-miR-4805-5p	Y47G6A.18	161	-25.73	78.95	78.95
72140	cel-miR-800-5p	Y47G6A.18	160	-18.97	73.68	73.68
45510	cel-miR-250-3p	Y47G6A.18	154	-13.00	64.71	82.35
112718	cel-miR-5545-5p	Y47G6A.18	154	-19.01	72.00	72.00
150376	cel-miR-8209-5p	Y47G6A.18	154	-14.41	65.22	73.91
112720	cel-miR-5545-5p	Y47G6A.18	153	-21.81	66.67	66.67
112719	cel-miR-5545-5p	Y47G6A.18	153	-24.19	66.67	66.67
151275	cel-miR-8210-3p	Y47G6A.18	151	-10.95	69.57	69.57
80396	cel-miR-1824-3p	Y47G6A.18	150	-25.70	65.22	65.22
140686	cel-miR-8197-3p	Y47G6A.18	150	-18.44	63.64	72.73
43596	cel-miR-247-5p	Y47G6A.18	150	-8.84	66.67	76.19
60290	cel-miR-784-3p	Y47G6A.18	150	-12.79	100.00	100.00
2936	cel-miR-2-3p	Y47G6A.18	149	-15.03	55.00	75.00
138679	cel-miR-8192-3p	Y47G6A.18	148	-10.47	84.62	84.62
112721	cel-miR-5545-5p	Y47G6A.18	148	-15.69	65.22	69.57
137246	cel-miR-8190-5p	Y47G6A.18	147	-16.61	70.59	76.47
112722	cel-miR-5545-5p	Y47G6A.18	147	-17.83	70.59	76.47
8561	cel-miR-47-5p	Y47G6A.18	147	-16.98	90.00	90.00
112723	cel-miR-5545-5p	Y47G6A.18	147	-17.83	70.59	76.47
4178	cel-miR-38-5p	Y47G6A.18	144	-16.45	52.63	73.68
65020	cel-miR-789-2-5p	Y47G6A.18	143	-14.63	71.43	71.43
39833	cel-miR-243-5p	Y47G6A.18	143	-14.66	76.92	84.62
8202	cel-miR-46-5p	Y47G6A.18	143	-17.59	60.00	64.00
64413	cel-miR-789-5p	Y47G6A.18	142	-13.71	83.33	83.33
36320	cel-miR-235-3p	Y47G6A.18	142	-9.05	73.33	73.33
6751	cel-miR-43-3p	Y47G6A.18	142	-13.59	69.23	76.92
4179	cel-miR-38-5p	Y47G6A.18	142	-15.27	63.16	68.42
98690	cel-miR-4806-3p	Y47G6A.18	141	-11.80	87.50	100.00
20795	cel-miR-77-5p	Y47G6A.18	141	-12.84	87.50	100.00
4180	cel-miR-38-5p	Y47G6A.18	141	-20.71	61.54	69.23
74083	cel-miR-1019-3p	Y47G6A.18	140	-3.90	100.00	100.00
57779	cel-miR-359	Y47G6A.18	140	-13.29	100.00	100.00
20194	cel-miR-75-3p	Y47G6A.18	140	-8.86	100.00	100.00
4183	cel-miR-38-5p	Y47G6A.18	140	-18.26	100.00	100.00
4182	cel-miR-38-5p	Y47G6A.18	140	-16.38	100.00	100.00
4181	cel-miR-38-5p	Y47G6A.18	140	-16.38	100.00	100.00