Y47G6A.21 |

No description available.

Graphics for Y47G6A.21

3'UTR Zoom

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Legend: Blue:ORF, Gray:Updated 3'UTRome V3 dataset.

Operon Information

This gene is part of the operon CEOP1914 (I:3578690..3551967)
CEOP1914 contains 3 genes in the following order:
Blumenthal et al., Nature 417, 851-854
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3'UTR mapped for Y47G6A.21

If available, we display here the 3'UTRs sequences we obtained by our analysis (in FASTA format). Putative canonical PAS sites, if found, are highlighted in yellow.

1 ID: 21245 - Tier: 1 - Name: Y47G6A.21 - Cosmid: Y47G6A.21 - WBGeneID: WBGene00021646 - Length: 53 - PAS: aatgaa
Cluster Coverage (%): 1345 reads (100.00%)
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id Name Chr Strand Start End Length PAS Coverage
21245 Y47G6A.21 I - 3551953 3552004 53nt aatgaa (-20nt) 1345 reads

This 3'UTR isoform has been detected in the following tissues:
UTRome v31 Intestine2 Pharynx2 Body Muscle2 Arcade cells2 GABA neurons2 NMDA neurons2 Hypodermis2 Seam cells2
1Murari et al., 2023
2Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)


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