| Name: | YARCTy1-1 |
|---|---|
| Type: | LTR_retrotransposon |
| Description: | Long Terminal Repeat (LTR) retrotransposon of the Copia (Pseudoviridae) group; contains genes TYA Gag and TYB Pol, encoding proteins involved in structure and function of virus-like particles, flanked by two direct repeats; mutated in S288C |
| Source: | SGD |
| Position: | chrI:160239..166163 (- strand) |
| Length: | 5925 |
| Note: | Long Terminal Repeat (LTR) retrotransposon of the Copia (Pseudoviridae) group; contains genes TYA Gag and TYB Pol, encoding proteins involved in structure and function of virus-like particles, flanked by two direct repeats; mutated in S288C |
| Ontology_term: | SO:0000180 |
| dbxref: | SGD:S000006792 |
| load_id: | YARCTy1-1 |
>YARCTy1-1 class=Sequence position=chrI:160239..166163 (- strand) TGTTGGAATA GAAATCAACT ATCATCTACT AACTAGTATT TACATTACTA GTATATTATC ATATACGGTG TTAGAAGATG ACGCAAATGA TGAGAAATAG TCATCTAAAT TAGTGGAAGC TGAAACGCAA GGATTGATAA TGTAATAGGA TCAATGAATA TAAACATATA AAACGGAATG AGGAATAATC GTAATATTAG TATGTAGAAA TATAGATTCC ATTTTGAGGA TTCCTATATC CTCGAGGAGA ACTTCTAGTA TATTCTGTAT ACCTAATATT ATAGCCTTTA TCAACAATGG AATCCCAACA ATTATCTCAA CATTCACCCA TTTCTCATGG TAGCGCCTGT GCTTCGGTTA CTTCTAAGGA AGTCCACACA AATCAAGATC CGTTAGACGT TTCAGCTTCC AAAACAGAAG AATGTGAGAA GGCTTCCACT AAGGCTAACT CTCAACAGAC AACAACACCT GCTTCATCAG CTGTTCCAGA GAACCCCCAT CATGCCTCTC CTCAAACTGC TCAGTCACAT TCACCACAGA ATGGGCCGTA CCCACAGCAG TGCATGATGA CCCAAAACCA AGCCAATCCA TCTGGTTGGT CATTTTACGG ACACCCATCT ATGATTCCGT ATACACCTTA TCAAATGTCG CCTATGTACT TTCCACCTGG GCCACAATCA CAGTTTCCGC AGTATCCATC ATCAGTTGGA ACGCCTCTGA GCACTCCATC ACCTGAGTCA GGTAATACAT TTACTGATTC ATCCTCAGCG GACTCTGATA TGACATCCAC TAAAAAATAT GTCAGACCAC CACCAATGTT AACCTCACCT AATGACTTTC CAAATTGGGT TAAAACATAC ATCAAATTTT TACAAAACTC GAATCTCGGT GGTATTATTC CGACAGTAAA CGGAAAACCC GTACGTCAGA TCACTGATGA TGAACTCACC TTCTTGTATA ACACTTTTCA AATATTTGCT CCCTCTCAAT TCCTACCTAC CTGGGTCAAA GACATCCTAT CCGTTGATTA TACGGATATC ATGAAAATTC TTTCCAAAAG TATTGAAAAA ATGCAATCTG ATACCCAAGA GGCAAACGAC ATTGTGACCC TGGCAAATTT GCAATATAAT GGCAGTACAC CTGCAGATGC ATTTGAAACA AAAGTCACAA ACATTATCGA CAGACTGAAC AATAATGGCA TTCATATCAA TAACAAGGTC GCATGCCAAT TAATTATGAG AGGTCTATCT GGCGAATATA AATTTTTACG CTACACACGT CATCGACATC TAAATATGAC AGTCGCTGAA CTGTTCTTAG ATATCCATGC TATTTATGAA GAACAACAGG GATCGAGAAA CAGTAAACCT AATTACAGGA GAAATCCGAG TGATGAGAAG AATGATTCTC GCAGCTATAC GAATACAACC AAACCCAAAG TTATAGCTCG GAATCCTCAA AAAACAAATA ATTCGAAATC GAAAACAGCC AGGGCTCACA ATGTATCCAC ATCTAATAAC TCTCCCAGCA CGGACAACGA TTCCATCAGT AAATCAACTA CTGAACCGAT TCAATTGAAC AATAAGCACG ACCTTCATCT TAGGCCAGAA ACTTACTGAA TCTACAGTAA ATCATACTAA TCATTCTGAT GATGAACTCC CTGGACACCT CCTTCTCGAT TCAGGAGCAT CACGAACCCT TATAAGATCT GCTCATCACA TACACTCAGC ATCATCTAAT CCTGACATAA ACGTAGTTGA TGCTCAAAAA AGAAATATAC CAATTAACGC TATTGGTGAC CTACAATTTC ACTTCCAGGA CAACACCAAA ACATCAATAA AGGTATTGCA CACTCCTAAC ATAGCCTATG ACTTACTCAG TTTGAATGAA TTGGCTGCAG TAGATATCAC AGCATGCTTT ACCAAAAACG TCTTAGAACG GTCTGACGGC ACTGTACTTG CACCTATCGT AAAATATGGA GACTTTTACT GGGTATCTAA AAAGTACTTG CTTCCATCAA ATATCTCCGT ACCCACCATC AATAATGTCC ATACAAGTGA AAGTACACGC AAATATCCTT ATCCTTTCAT TCATCGAATG CTTGCGCATG CCAATGCACA GACAAATTCG ATACTCACTT AAAAATAACA CCATCACGTA TTTTAACGAA TCAGATGTCG ACTGGTCTAG TGCTATTGAC TATCAATGTC CTGATTGTTT AATCGGCAAA AGCACCAAAC ACAGACATAT CAAAGGTTCA CGACTAAAAT ACCAAAATTC ATACGAACCC TTTCAATACC TACATACTGA CATATTTGGT CCAGTTCACA ACCTACCAAA AAGTGCACCA TCCTATTTCA TCTCATTTAC TGATGAGACA ACAAAATTGC GTTGGGTTTA TCCATTACAC GACCGTCGCG AGGACTCTAT CCTCGATGTT TTTACTACGA TACTAGCTTT TATTAAAAAC CAGTTTCAGG CCAGTGTCTT GGTTATACAA ATGGACCGTG GTTCTGAGTA TACTAACAGA ACTCTCCATA AATTCCTTGA AAAAAATGGT ATAACTCCAT GCTATACAAC CACAGCGGAT TCCCGAGCAC ATGGAGTCGC TGAACGGCTA AACCGTACCT TATTAGATGA CTGCCGTACT CAACTGCAAT GTAGTGGTTT ACCGAACCAT TTATGGTTCT CTGCAATCGA ATTTTCTACT ATTGTGAGAA ATTCACTAGC TTCACCTAAA AGCAAAAAAT CTGCAAGACA ACATGCTGGC TTGGCAGGAC TTGATATCAG TACTTTGTTA CCTTTCGGTC AACCTGTTAT CGTCAATGAT CACAACCCTA ACTCCAAAAT ACATCCTCGT GGCATCCCAG GCTACGCTCT ACATCCGTCT CGAAACTCTT ATGGATATAT CATCTATCTT CCATCCTTAA AGAAGACAGT AGATACAACT AACTATGTTA TTCTTCAGGG CAAGGAATCC AGATTAGATC AATTCAATTA CGACGCACTC ACTTTCGATG AAGACTTAAA CCGTTTAACT GCTTCATATC ATTCGTTCAT TGCGTCAAAT GAGATCCAAG AATCCAATGA TCTTAACATA GAATCTGACC ATGACTTCCA ATCCGACATT GAACTACATC CTGAGCAACC GAGAAATGTC CTTTCAAAAG CTGTGAGTCC AACCGATTCC ACACCTCCGT CAACTCATAC TGAAGATTCG AAACGTGTTT CTAAAACCAA TATTCGCGCA CCCAGAGAAG TTGACCCCAA CATATCTGAA TCTAATATTC TTCCATCAAA GAAGAGATCT AGCACCCCCC AAATTTCCAA TATCGAGAGT ACCGGTTCGG GTGGTATGCA TAAATTAAAT GTTCCTTTAC TTGCTCCCAT GTCCCAATCT AACACACATG AGTCGTCGCA CGCCAGTAAA TCTAAAGATT TCAGACACTC AGACTCGTAC AGTGAAAATG AGACTAATCA TACAAACGTA CCAATATCCA GTACGGGTGG TACCAACAAC AAAACTGTTC CGCAGATAAG TGACCAAGAG ACTGAGAAAA GGATTATACA CCGTTCACCT TCAATCGATG CTTCTCCACC GGAAAATAAT TCATCGCACA ATATTGTTCC TATCAAAACG CCAACTACTG TTTCTGAACA GAATACCGAG GAATCTATCA TCGCTGATCT CCCACTCCCT GATCTACCTC CAGAATCTCC TACCGAATTC CCTGACCCAT TTAAAGAACT CCCACCGATA AATTCTCATC AAACTAATTC CAGTTTGGGT GGTATTGGTG ACTCTAATGC CTATACTACT ATCAACAGTA AGAAAAGATC ATTAGAAGAT AATGAAACTG AAATTAAGGT ATCACGAGAC ACATGGAATA CTAAGAATAT GCGTAGTTTA GAACCTCCGA GATCGAAGAA ACGAATTCAC CTGATTGCAG CTGTAAAAGC AGTAAAATCA ATCAAACCAA TACGGACAAC CTTACGATAC GATGAGGCAA TCACCTATAA TAAAGATATT AAAGAAAAAG AAAAATATAT CGAGGCATAC CACAAAGAAG TCAACCAACT ATTGAAAATG AATACTTGGG ACACTGACAA ATATTATGAC AGAAAAGAAA TAGACCCTAA AAGAGTAATA AACTCAATGT TTATCTTCAA CAAGAAACGT GACGGAACTC ATAAAGCTAG ATTTGTTGCA AGAGGTGACA TTCAGCATCC TGATACGTAC GATACAGGTA TGCAATCCAA CACTGTACAT CATTATGCGT TGATGACATC CCTGTCACTT GCATTAGACA ATAACTACTA TATTACACAA TTAGACATAT CTTCGGCATA TTTGTATGCA GACATCAAAG AAGAATTATA CATAAGACCT CCACCACATT TAGGAATGAA TGATAAGTTG ATACGTTTGA AGAAATCACT TTATGGATTG AAACAAAGTG GAGCGAACTG GTACGAAACT ATCAAATCAT ACCTGATAAA ACAGTGTGGT ATGGAAGAAG TTCGTGGATG GTCATGCGTA TTTAAGAATA GTCAAGTAAC AATTTGCTTA TTCGTTGATG ATATGATATT GTTCAGCAAA GACTTAAATG CAAATAAGAA AATCATAACA ACACTCAAGA AACAATACGA TACAAAGATA ATAAATCTGG GTGAAAGTGA TAACGAAATT CAGTACGACA TACTTGGCTT AGAAATCAAA TATCAAAGAG GTAAATACAT GAAATTAGGT ATGGAAAAAT CCTTGACAGA AAAATTACCC AAACTAAACG TACCTTTGAA CCCAAAAGGA AAGAAACTTA GAGCTCCAGG TCAACCAGGT CTTTATATAG ACCAGGATGA ACTAGAAATA GATGAAGATG AATACAAAGA GAAGGTACAT GAAATGCAAA AGTTGATTGG TCTAGCTTCA TATGTTGGAT ATAAATTTAG ATTTGACTTA CTATACTACA TCAACACACT TGCTCAACAT ATACTATTCC CCTCTAGGCA AGTTTTAGAC ATGACATATG AGTTGATACA ATTCATGTGG GACACTAGAG ATAAACAACT GATATGGCAC AAAAACAAAC CTACCGAGCC AGATAATAAA CTAGTCGCAA TAAGTGATGC TTCGTATGGC AACCAACCGT ATTATAAATC ACAAATTGGC AACATATATT TACTTAATGG AAAGGTAATT GGAGGAAAGT CCACCAAGGC TTCATTAACA TGTACTTCAA CTACGGAAGC AGAAATACAC GCGATAAGTG AATCTGTCCC ATTATTAAAT AATCTAAGTT ACCTGATACA AGAACTTAAC AAGAAACCAA TTATTAAAGG CTTACTTACT GATAGTAGAT CAACGATCAG TATAATTAAG TCTACAAATG AAGAGAAATT TAGAAACAGA TTTTTTGGCA CAAAGGCAAT GAGACTTAGA GATGAAGTAT CAGGTAATAA TTTATACGTA TACTACATCG AGACCAAGAA GAACATTGCT GATGTGATGA CAAAACCTCT TCCGATAAAA ACATTTAAAC TATTAACTAA CAAATGGATT CATTAGATCT ATTACATTAT GGGTGGTATG TTGGAATAGA AATCAACTAT CATCTACTAA CTAGTATTTA CATTACTAGT ATATTATCAT ATACGGTGTT AGAAGATGAC GCAAATGATG AGAAATAGTC ATCTAAATTA GTGGAAGCTG AAACGCAAGG ATTGATAATG TAATAGGATC AATGAATATA AACATATAAA ACGGAATGAG GAATAATCGT AATATTAGTA TGTAGAAATA TAGATTCCAT TTTGAGGATT CCTATATCCT CGAGGAGAAC TTCTAGTATA TTCTGTATAC CTAATATTAT AGCCTTTATC AACAATGGAA TCCCAACAAT TATCTCAACA TTCACCCATT TCTCA
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$Id: yeast.conf,v 1.4.2.9 2009/05/12 02:21:50 scottcain Exp $
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