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A C. elegans 3'UTR Database - WS250

Raw Data

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The C. elegans 3' UTRome v2 resource for studying mRNA cleavage and polyadenylation, 3'-UTR biology, and miRNA targeting
Hannah S Steber, Christina Gallante, Shannon O'Brien, Po-Lin Chiu and Marco Mangone
Genome Research (2017) 2019 Dec;29(12):2104-2116. doi: 10.1101/gr.254839.119

UTRome V2 Dataset

Updated miRanda Predictions

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Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues
Blazie S, Geissel H, Wilky H, Joshi R, Newbern J and Mangone M
Genetics (2017) https://doi.org/10.1534/genetics.116.196774

bath-15_rep1.fastq.gz

bath-15_rep2.fastq.gz

grd-10_rep1.fastq.gz

grd-10_rep2.fastq.gz

dpy-7_rep1.fastq.gz

dpy-7_rep2.fastq.gz

nmr-1_rep1.fastq.gz

nmr-1_rep2.fastq.gz

unc-47_rep1.fastq.gz

unc-47_rep2.fastq.gz

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Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles
Blazie S, Babb C, Wilky H, Rawls A, Park J and Mangone M
BMC Biology (2015) 13:4 doi:10.1186/s12915-015-0116-6

ges-1_rep1_R1.fastq.gz

ges-1_rep1_R2.fastq.gz

ges-1_rep2_R1.fastq.gz

ges-1_rep2_R2.fastq.gz

myo-2_rep1_R1.fastq.gz

myo-2_rep1_R2.fastq.gz

myo-2_rep2_R1.fastq.gz

myo-2_rep2_R2.fastq.gz

myo-3_rep1_R1.fastq.gz

myo-3_rep1_R2.fastq.gz

myo-3_rep2_R1.fastq.gz

myo-3_rep2_R2.fastq.gz

myo-2delta__rep1_R1.fastq.gz

myo-2delta__rep1_R2.fastq.gz

myo-2delta__rep2_R1.fastq.gz

myo-2delta__rep2_R2.fastq.gz

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Funding