C50D2.5 |

No description available.

Graphics for C50D2.5

3'UTR Zoom

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Legend: Blue:ORF, Gray:Updated 3'UTRome V3 dataset.

3'UTR mapped for C50D2.5

If available, we display here the 3'UTRs sequences we obtained by our analysis (in FASTA format). Putative canonical PAS sites, if found, are highlighted in yellow.

1 ID: 15966 - Tier: 1 - Name: C50D2.5 - Cosmid: C50D2.5 - WBGeneID: WBGene00016808 - Length: 70 - PAS: aatgaa
Cluster Coverage (%): 6813 reads (100.00%)
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id Name Chr Strand Start End Length PAS Coverage
15966 C50D2.5 II + 98893 98962 70nt aatgaa (-23nt) 6813 reads

This 3'UTR isoform has been detected in the following tissues:
UTRome v31 Intestine2 Pharynx2 Body Muscle2 Arcade cells2 GABA neurons2 NMDA neurons2 Hypodermis2 Seam cells2
1Murari et al., 2023
2Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)

Updated miRanda Targets for C50D2.5 (Murari et al., submitted)

C50D2.5 transcript has been predicted to be targeted by the following miRNAs:

ID miRNA Target Gene Score Energy % Binding (Target) % Binding (miRNA)
42540 cel-miR-247-5p C50D2.5 147 -8.72 72.22 72.22
136756 cel-miR-8190-5p C50D2.5 143 -13.62 61.11 77.78


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