C50F2.5
C50F2.5 |
No description available.
Graphics for C50F2.5
3'UTR Zoom
Locus
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3'UTR mapped for C50F2.5
If available, we display here the 3'UTRs sequences we obtained by our analysis (in FASTA format). Putative canonical PAS sites, if found, are highlighted in yellow.1
ID: 16000 -
Tier: 1 -
Name: C50F2.5 -
Cosmid: C50F2.5 -
WBGeneID: WBGene00016839 -
Length: 56 -
PAS: AATAAA
Cluster Coverage (%): 394 reads (36.40%)
(See this 3'UTR in GBrowse!) (See this Gene in GBrowse!)
| id | Name | Chr | Strand | Start | End | Length | PAS | Coverage |
|---|---|---|---|---|---|---|---|---|
| 16000 | C50F2.5 | I | - | 3895770 | 3895824 | 56nt | AATAAA (-17nt) | 394 reads |
This 3'UTR isoform has been detected in the following tissues:
| UTRome v31 | Intestine2 | Pharynx2 | Body Muscle2 | Arcade cells2 | GABA neurons2 | NMDA neurons2 | Hypodermis2 | Seam cells2 |
|---|---|---|---|---|---|---|---|---|
 |
2Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)
>|3'UTR|56nt|I:3895770..3895824|PAS:AATAAA
agaagagaaaugacccugagaacugagaacuauugcaaaauaaaauguuuguaga
2
ID: 15999 -
Tier: 1 -
Name: C50F2.5 -
Cosmid: C50F2.5 -
WBGeneID: WBGene00016839 -
Length: 66 -
PAS: AATAAA
Cluster Coverage (%): 687 reads (63.60%)
(See this 3'UTR in GBrowse!) (See this Gene in GBrowse!)
| id | Name | Chr | Strand | Start | End | Length | PAS | Coverage |
|---|---|---|---|---|---|---|---|---|
| 15999 | C50F2.5 | I | - | 3895760 | 3895824 | 66nt | AATAAA (-27nt) | 687 reads |
This 3'UTR isoform has been detected in the following tissues:
| UTRome v31 | Intestine2 | Pharynx2 | Body Muscle2 | Arcade cells2 | GABA neurons2 | NMDA neurons2 | Hypodermis2 | Seam cells2 |
|---|---|---|---|---|---|---|---|---|
|
2Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)
>|3'UTR|66nt|I:3895760..3895824|PAS:AATAAA
agaagagaaaugacccugagaacugagaacuauugcaaaauaaaauguuuguagauucgugcuuu
Updated miRanda Targets for C50F2.5 (Murari et al., submitted)
C50F2.5 transcript has been predicted to be targeted by the following miRNAs:| ID | miRNA | Target Gene | Score | Energy | % Binding (Target) | % Binding (miRNA) |
|---|---|---|---|---|---|---|
| 105913 | cel-miR-4816-3p | C50F2.5 | 143 | -9.24 | 61.11 | 66.67 |
External Databases
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Related Papers
There are no recent papers related to C50F2.5.
The APAome Project is currently funded by the School of Life Sciences at Arizona State University