F21A9.1 |

No description available.

Graphics for F21A9.1

3'UTR Zoom

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Legend: Blue:ORF, Gray:Updated 3'UTRome V3 dataset.

3'UTR mapped for F21A9.1

If available, we display here the 3'UTRs sequences we obtained by our analysis (in FASTA format). Putative canonical PAS sites, if found, are highlighted in yellow.

1 ID: 16897 - Tier: 1 - Name: F21A9.1 - Cosmid: F21A9.1 - WBGeneID: WBGene00017650 - Length: 36 - PAS: tataaa
Cluster Coverage (%): 24 reads (100.00%)
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id Name Chr Strand Start End Length PAS Coverage
16897 F21A9.1 I + 3713113 3713148 36nt tataaa (-20nt) 24 reads

This 3'UTR isoform has been detected in the following tissues:
UTRome v31 Intestine2 Pharynx2 Body Muscle2 Arcade cells2 GABA neurons2 NMDA neurons2 Hypodermis2 Seam cells2
1Murari et al., 2023
2Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)

Updated miRanda Targets for F21A9.1 (Murari et al., submitted)

F21A9.1 transcript has been predicted to be targeted by the following miRNAs:

ID miRNA Target Gene Score Energy % Binding (Target) % Binding (miRNA)
128232 cel-miR-5550-3p F21A9.1 150 -8.20 100.00 100.00
92895 cel-miR-2218b-3p F21A9.1 148 -6.39 68.42 73.68


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