F55C7.2

F55C7.2 |

No description available.

Graphics for F55C7.2

3'UTR Zoom

Locus

Legend: Blue:ORF, Gray:Updated 3'UTRome V3 dataset.

3'UTR mapped for F55C7.2

If available, we display here the 3'UTRs sequences we obtained by our analysis (in FASTA format). Putative canonical PAS sites, if found, are highlighted in yellow.

1 ID: 18220 - Tier: 1 - Name: F55C7.2 - Cosmid: F55C7.2 - WBGeneID: WBGene00018868 - Length: 303 - PAS: tataaa
Cluster Coverage (%): 6 reads (100.00%)
(See this 3'UTR in GBrowse!) (See this Gene in GBrowse!)

id	Name	Chr	Strand	Start	End	Length	PAS	Coverage
18220	F55C7.2	I	+	4006019	4006321	303nt	tataaa (-9nt)	6 reads

This 3'UTR isoform has been detected in the following tissues:

UTRome v3¹	Intestine²	Pharynx²	Body Muscle²	Arcade cells²	GABA neurons²	NMDA neurons²	Hypodermis²	Seam cells²

¹Murari et al., 2023
²Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)

>|3'UTR|303nt|I:4006019..4006321|PAS:tataaa
aacaguaacucuuuuuuacuuuguucaaaagguaacgaaagcagcagaaaaaaaaacaagcacggaccccuccaaguuca
gugaagcagaauaugauucggaaaccggaaggaaggaaaacgugggauucaagauucaggauucaaggacugaggagcug
guguggugguuacugagguuucccccaguuuccggugcauuggaacgcuuugaaaaaaaaaacggggaauuccuuuacgu
guuaggaaucgaauuucacaguccgagugagaucacaucuaauuccucuacacuauaaaaga

Updated miRanda Targets for F55C7.2 (Murari et al., submitted)

F55C7.2 transcript has been predicted to be targeted by the following miRNAs:

ID	miRNA	Target Gene	Score	Energy	% Binding (Target)	% Binding (miRNA)
28618	cel-miR-85-3p	F55C7.2	154	-12.49	76.47	82.35
22174	cel-miR-80-5p	F55C7.2	150	-13.29	68.42	73.68
4108	cel-miR-38-5p	F55C7.2	142	-20.68	77.78	100.00
55262	cel-miR-355-5p	F55C7.2	142	-10.60	64.71	64.71
111190	cel-miR-4929	F55C7.2	140	-11.27	100.00	100.00
112648	cel-miR-5545-5p	F55C7.2	140	-13.67	100.00	100.00