T03F1.10 | C-type LECtin 53

No description available.

Graphics for clec-53

3'UTR Zoom

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Legend: Blue:ORF, Gray:Updated 3'UTRome V3 dataset.

3'UTR mapped for clec-53

If available, we display here the 3'UTRs sequences we obtained by our analysis (in FASTA format). Putative canonical PAS sites, if found, are highlighted in yellow.

1 ID: 19662 - Tier: 1 - Name: clec-53 - Cosmid: T03F1.10 - WBGeneID: WBGene00020191 - Length: 31 - PAS: aataaa
Cluster Coverage (%): 463 reads (100.00%)
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id Name Chr Strand Start End Length PAS Coverage
19662 clec-53 I - 3871474 3871503 31nt aataaa (-18nt) 463 reads

This 3'UTR isoform has been detected in the following tissues:
UTRome v31 Intestine2 Pharynx2 Body Muscle2 Arcade cells2 GABA neurons2 NMDA neurons2 Hypodermis2 Seam cells2
1Murari et al., 2023
2Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)

Predicted or Experimental Interactors for clec-53 (WormBase)

clec-53 has been predicted to interact with the following genes (data from WS200):

  • chk-2 Lee I et al. (2008)
    chk-2 encodes a member of the Cds1/Chk2 checkpoint kinase family, orthologous to human CHK2 (OMIM:604373, mutated in Li-Fraumeni syndrome), that affects pairing between homologous chromosomes during early meiotic prophase, and might function to couple premeiotic S phase with early prophase; CHK-2 is expressed in the germ line.
  • clec-49 Lee I et al. (2008)
    none available
  • mlh-1 Lee I et al. (2008)
    The mlh-1 gene encodes a DNA mismatch repair protein homolog that is orthologous to human MLH1.


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