T20F5.8 |

No description available.

Graphics for T20F5.8

3'UTR Zoom

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Legend: Blue:ORF, Gray:Updated 3'UTRome V3 dataset.

3'UTR mapped for T20F5.8

If available, we display here the 3'UTRs sequences we obtained by our analysis (in FASTA format). Putative canonical PAS sites, if found, are highlighted in yellow.

1 ID: 23839 - Tier: 1 - Name: T20F5.8 - Cosmid: T20F5.8 - WBGeneID: WBGene00077599 - Length: 82 - PAS: AATAAA
Cluster Coverage (%): 1375 reads (100.00%)
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id Name Chr Strand Start End Length PAS Coverage
23839 T20F5.8 I - 3910714 3910794 82nt AATAAA (-19nt) 1375 reads

This 3'UTR isoform has been detected in the following tissues:
UTRome v31 Intestine2 Pharynx2 Body Muscle2 Arcade cells2 GABA neurons2 NMDA neurons2 Hypodermis2 Seam cells2
1Murari et al., 2023
2Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)
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Updated miRanda Targets for T20F5.8 (Murari et al., submitted)

T20F5.8 transcript has been predicted to be targeted by the following miRNAs:

ID miRNA Target Gene Score Energy % Binding (Target) % Binding (miRNA)
74916 cel-miR-1020-3p T20F5.8 162 -12.25 76.47 82.35
37887 cel-miR-239a-3p T20F5.8 150 -14.15 68.18 72.73
106332 cel-miR-4920 T20F5.8 145 -9.16 100.00 100.00


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