T28F2.6 | COLlagen 50

col-50 encodes a cuticle collagen.

Graphics for col-50

3'UTR Zoom

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Legend: Blue:ORF, Gray:Updated 3'UTRome V3 dataset.

3'UTR mapped for col-50

If available, we display here the 3'UTRs sequences we obtained by our analysis (in FASTA format). Putative canonical PAS sites, if found, are highlighted in yellow.

1 ID: 596 - Tier: 1 - Name: col-50 - Cosmid: T28F2.6 - WBGeneID: WBGene00000627 - Length: 68 - PAS: aataaa
Cluster Coverage (%): 3101 reads (100.00%)
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id Name Chr Strand Start End Length PAS Coverage
596 col-50 I - 3651230 3651296 68nt aataaa (-21nt) 3101 reads

This 3'UTR isoform has been detected in the following tissues:
UTRome v31 Intestine2 Pharynx2 Body Muscle2 Arcade cells2 GABA neurons2 NMDA neurons2 Hypodermis2 Seam cells2
1Murari et al., 2023
2Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)

Predicted or Experimental Interactors for col-50 (WormBase)

col-50 has been predicted to interact with the following genes (data from WS200):

  • lsm-6 Lee I et al. (2008)
    none available
  • lsm-7 Lee I et al. (2008)
    none available
  • xrn-1 Lee I et al. (2008)


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