Y47G6A.25 |

Y47G6A.25 encodes a novel protein conserved in C. remanei and C. briggsae.

Graphics for Y47G6A.25

3'UTR Zoom

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Legend: Blue:ORF, Gray:Updated 3'UTRome V3 dataset.

Operon Information

This gene is part of the operon CEOP1100 (I:3608347..3604521)
CEOP1100 contains 3 genes in the following order:
Blumenthal et al., Nature 417, 851-854
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3'UTR mapped for Y47G6A.25

If available, we display here the 3'UTRs sequences we obtained by our analysis (in FASTA format). Putative canonical PAS sites, if found, are highlighted in yellow.

1 ID: 21250 - Tier: 1 - Name: Y47G6A.25 - Cosmid: Y47G6A.25 - WBGeneID: WBGene00021649 - Length: 57 - PAS: AATAAA
Cluster Coverage (%): 645 reads (100.00%)
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id Name Chr Strand Start End Length PAS Coverage
21250 Y47G6A.25 I - 3606411 3606466 57nt AATAAA (-20nt) 645 reads

This 3'UTR isoform has been detected in the following tissues:
UTRome v31 Intestine2 Pharynx2 Body Muscle2 Arcade cells2 GABA neurons2 NMDA neurons2 Hypodermis2 Seam cells2
1Murari et al., 2023
2Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)

Updated miRanda Targets for Y47G6A.25 (Murari et al., submitted)

Y47G6A.25 transcript has been predicted to be targeted by the following miRNAs:

ID miRNA Target Gene Score Energy % Binding (Target) % Binding (miRNA)
140039 cel-miR-8197-5p Y47G6A.25 150 -13.14 76.92 84.62
74851 cel-miR-1020-3p Y47G6A.25 147 -7.38 61.11 72.22
51165 cel-miR-259-5p Y47G6A.25 140 -8.65 100.00 100.00


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