Y47G6A.3 |

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Graphics for Y47G6A.3

3'UTR Zoom

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Legend: Blue:ORF, Gray:Updated 3'UTRome V3 dataset.

3'UTR mapped for Y47G6A.3

If available, we display here the 3'UTRs sequences we obtained by our analysis (in FASTA format). Putative canonical PAS sites, if found, are highlighted in yellow.

1 ID: 21230 - Tier: 1 - Name: Y47G6A.3 - Cosmid: Y47G6A.3 - WBGeneID: WBGene00021633 - Length: 50 - PAS: AATAAA
Cluster Coverage (%): 623 reads (100.00%)
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id Name Chr Strand Start End Length PAS Coverage
21230 Y47G6A.3 I + 3602858 3602907 50nt AATAAA (-19nt) 623 reads

This 3'UTR isoform has been detected in the following tissues:
UTRome v31 Intestine2 Pharynx2 Body Muscle2 Arcade cells2 GABA neurons2 NMDA neurons2 Hypodermis2 Seam cells2
1Murari et al., 2023
2Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)

Updated miRanda Targets for Y47G6A.3 (Murari et al., submitted)

Y47G6A.3 transcript has been predicted to be targeted by the following miRNAs:

ID miRNA Target Gene Score Energy % Binding (Target) % Binding (miRNA)
87103 cel-miR-2209c-5p Y47G6A.3 143 -9.94 83.33 83.33
85988 cel-miR-2209a-5p Y47G6A.3 140 -7.73 100.00 100.00


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