C32E8.9
C32E8.9 |
No description available.
Graphics for C32E8.9
3'UTR Zoom
Locus
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Operon Information
This gene is part of the operon CEOP1112 (I:3805720..3794558)CEOP1112 contains 2 genes in the following order:
Blumenthal et al., Nature 417, 851-854
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3'UTR mapped for C32E8.9
If available, we display here the 3'UTRs sequences we obtained by our analysis (in FASTA format). Putative canonical PAS sites, if found, are highlighted in yellow.1
ID: 15420 -
Tier: 1 -
Name: C32E8.9 -
Cosmid: C32E8.9 -
WBGeneID: WBGene00016325 -
Length: 74 -
PAS: aatgaa
Cluster Coverage (%): 2240 reads (100.00%)
(See this 3'UTR in GBrowse!) (See this Gene in GBrowse!)
id | Name | Chr | Strand | Start | End | Length | PAS | Coverage |
---|---|---|---|---|---|---|---|---|
15420 | C32E8.9 | I | - | 3794556 | 3794628 | 74nt | aatgaa (-20nt) | 2240 reads |
This 3'UTR isoform has been detected in the following tissues:
UTRome v31 | Intestine2 | Pharynx2 | Body Muscle2 | Arcade cells2 | GABA neurons2 | NMDA neurons2 | Hypodermis2 | Seam cells2 |
---|---|---|---|---|---|---|---|---|
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2Blazie et al., 2016 - Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues. - under review (mixed stages & tissue-specific datasets)
>|3'UTR|74nt|I:3794556..3794628|PAS:aatgaa
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Updated miRanda Targets for C32E8.9 (Murari et al., submitted)
C32E8.9 transcript has been predicted to be targeted by the following miRNAs:ID | miRNA | Target Gene | Score | Energy | % Binding (Target) | % Binding (miRNA) |
---|---|---|---|---|---|---|
100859 | cel-miR-4809-3p | C32E8.9 | 148 | -11.99 | 84.62 | 84.62 |
More on C32E8.9
Related Papers
There are no recent papers related to C32E8.9.![SoLS](/UTRome/images/SOLS_RGB.png)
The APAome Project is currently funded by the School of Life Sciences at Arizona State University